In this page the junior champions from 1987 onwards are listed. Actually the first Malta Junior Championship was held in 1946. Currently the Malta Chess Federation is doing all its best to try to find out and build a complete list of champions from 1946 onwards.
| Year | Champions | ||||||
| U/20 | U/18 | U/16 | U/14 | U/12 | U/10 | U/8 | |
| 1987 | Duncan Vella | - | - | - | - | - | - |
| 1988 | Joseph Stafrace | - | - | - | - | - | - |
| 1989 | Joseph Stafrace | - | - | - | - | - | - |
| 1990 | Joseph Stafrace | - | - | - | - | - | - |
| 1991 | Duncan Vella | - | - | - | - | - | - |
| 1992 | Timothy Mifsud | - | - | - | - | - | - |
| 1993 | Timothy Mifsud | - | - | - | - | - | - |
| 1994 | Timothy Mifsud | - | - | - | - | - | - |
| 1995 | Peter Pullicino | - | - | - | - | - | - |
| 1996 | David Cilia Vincenti | - | - | - | - | - | - |
| 1997 | Colin Pace | - | - | - | - | - | - |
| 1998 | Timothy Mifsud | - | - | - | - | - | - |
| 1999 | Colin Pace | - | - | - | Justin Farrugia | Mark Cardona | - |
| 2000 | Daniel Abela | - | - | - | - | - | - |
| 2001 | Daniel Abela | - | - | - | - | - | - |
| 2002 | Daniel Abela | - | - | - | - | - | - |
| 2003 | Charles Sinn | - | - | - | - | - | - |
| 2004 | Mark Cardona | Christian Pullicino | Justin Farrugia | Omar Shamala | Luke Saliba | Rubi Mercieca | - |
| 2005 | Mark Cardona | Sam Sacco | Glenn Fenech | Luke Saliba | Luke Buhagiar | Rubi Mercieca | - |
| 2006 | Mark Cardona | Christopher Farrugia | Leonard Farrugia | Luke Saliba | Rubi Mercieca | Jean-Pierre Xuereb | - |
| 2007 | Robert Zerafa | Mark Cardona | Kevin White | Luca Vassallo | Jean Luc Mangion | Jamie Farrugia | Miguel Sacco |
| 2008 | Robert Zerafa | Luke Saliba | Luca Vassallo | Jean Luc Mangion | Jean Pierre Xuereb | Adrian Cutajar | Timothy Portelli |
| 2009 | Robert Zerafa | Luca Vassallo | Vincent Zerafa | Christian Schembri | Adrian Cutajar | Jamie Farrugia | Michael Farrugia |
| 2010 | Andre Xuereb | Luca Vassallo | Jake Darmanin | Jean Pierre Xuereb | Jamie Farrugia | Timothy Portelli | Isaac Portelli |
| 2011 | Jake Darmanin | - | - | Timothy Portelli | - | - | - |